PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0222491
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 263aa    MW: 31259.6 Da    PI: 9.6114
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0222491genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.3e-151150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i n+s r +tf kR++g+lKK  E+ +L d+++avii+s+
  RcHm_v2.0_Chr7g0222491 11 IANESSRRTTFRKRKKGLLKKVGEITTLYDIKAAVIIYSP 50
                            89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MARRKVRLHY IANESSRRTT FRKRKKGLLK KVGEITTLYD IKAAVIIYSP FDGEPKVFPS  60
HPEVHEVLTK FRDMSQMDKT RKMVDQETFL RQRIDKVREQ IRKLKRDNRE KEITQVMFGC  120
LKGRTLSDLE MKDLQDLNFI IERNLRELEI KQRDVDEQNA DEQKQEENQE NQLNQVQAES  180
IVVELGLTTR NAFGEGTNRG VQQQHHQAAM ESQSMEQWQY QMMQVTAQRQ QHQQLFQQQP  240
WFVDIMNPPS PQTRDFLHPL PPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVRLHYIANESSRRTTFRKRK
22226RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-37M-type_MADS family protein