PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0225481

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 197aa MW: 22660.1 Da PI: 4.4822

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0225481	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.9	1.9e-36	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Ptdeelvv++L++k++ +l+ +vi+++d++ ++Pw+L+ k+ e k+wyf+s+r +nr+t++gyWk g RcHm_v2.0_Chr7g0225481 8 LPPGFRFFPTDEELVVHFLQRKAALLPLHP-DVIPDLDLCPYDPWELNGKALCEGKQWYFYSRRT--------QNRVTSNGYWKPLG 85 79***********************999.99**********97777789***984........58******** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++v+s ++++vg+k+ + fy g+ap g +t+W+mheyrl RcHm_v2.0_Chr7g0225481 86 TEEPVISFtSNNKVGIKRYFGFYVGEAPLGIQTNWTMHEYRL 127 *99767889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MADNPSQLPP GFRFFPTDEE LVVHFLQRKA ALLPLHPDVI PDLDLCPYDP WELNGKALCE 60 GKQWYFYSRR TQNRVTSNGY WKPLGTEEPV ISFTSNNKVG IKRYFGFYVG EAPLGIQTNW 120 TMHEYRLSAD SDTYASSSTT RSSKRRGHRK AVNEYSGYVL CRVYECDEDE DDDGTELSCL 180 DEVYLSLDDL DEISFPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-75	NAC family protein