PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0227431
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 187aa    MW: 21698.9 Da    PI: 6.5292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0227431genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.85.8e-1118881690
                            EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                      B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                            + +p +f++++g++   s  +t++ + g +Wev+l  +++ g++ ++kGW +F k      +D +vF ++g+s+f
  RcHm_v2.0_Chr7g0227431 18 FGIPEDFVSKYGKD--LSSSVTFRLPCGSEWEVEL--TRYNGEVRFEKGWPDFSKFYSPGYNDLLVFGYEGKSRF 88
                            78*********977..7778***************..********************************998776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MLSATLHFVS GLFFCSFFGI PEDFVSKYGK DLSSSVTFRL PCGSEWEVEL TRYNGEVRFE  60
KGWPDFSKFY SPGYNDLLVF GYEGKSRFQE DQIGYIKVVG PWSGQKNSIP VLDLVMIMTM  120
LLIIIAVMRL IWWRKKKHTR ASVDVWNSSS SSELEISSIP GLPIRFNYEE LVTATESFKT  180
QNWQWWL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-10B3 family protein