PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0227911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 223aa    MW: 24211.8 Da    PI: 4.7909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0227911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13159204655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k Lq
  RcHm_v2.0_Chr7g0227911 159 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKFLQ 204
                             689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MQPAPGESGG EVTRGGGGLG RFCSAPASWL EALLEDEEED PLKPTQCLTD LLADNCEGPS  60
STAVGFGSDT TADPAAAFLR QNSSPADFVG NSSDGSEGYF SGFGIPTSLD YVANPNFSNV  120
SSSSANKRVR DVKMEEGGFE ESGTLRVRAK RGCATHPRSI AERVRRTRIS DRIRKLQELV  180
PNMDKQTNTA DMLDEAVEYV KFLQKQIQEL SEHQRRCKCI AKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-55bHLH family protein