PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0228681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 375aa MW: 43377.2 Da PI: 8.0072

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0228681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.5	6e-07	82	103	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H+++H RcHm_v2.0_Chr7g0228681 82 TCQECGLSFKKPAHLKQHMQSH 103 6*******************99 PP
2	zf-C2H2	13.6	0.0002	109	133	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC+ s++rk++L+rH+ H RcHm_v2.0_Chr7g0228681 109 YVCSvdDCHSSYRRKDHLTRHLFHH 133 99*******************9776 PP
3	zf-C2H2	11.3	0.001	138	163	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ F + n++rH + H RcHm_v2.0_Chr7g0228681 138 FKCPieNCNSEFAFQGNMTRHVSElH 163 89*******************99877 PP
4	zf-C2H2	17.3	1.4e-05	178	202	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s+L++H +H RcHm_v2.0_Chr7g0228681 178 HVCQekGCGKVFRFASQLRKHEDSH 202 789999***************9888 PP
5	zf-C2H2	12.2	0.00055	269	293	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C ++F+ ksnL++H + H RcHm_v2.0_Chr7g0228681 269 KCDyeGCLQTFTIKSNLRQHVKAvH 293 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MEEAEAETEV PTFRDIRRYY CDLRLLWHLP VQKVPHCFSR PHLPEVIFCY GIIGFCLHSW 60 NWDMAEANGD GDSEVERGKS NTCQECGLSF KKPAHLKQHM QSHSLERPYV CSVDDCHSSY 120 RRKDHLTRHL FHHQGKLFKC PIENCNSEFA FQGNMTRHVS ELHGEDCPSA NDGCQKQHVC 180 QEKGCGKVFR FASQLRKHED SHVKLDRVEA FCSEPGCMKQ FPNEECLKAH IQSCHQHITC 240 EICGTKQLKK NIKSHPRTHE EGGSMERIKC DYEGCLQTFT IKSNLRQHVK AVHLENKPFV 300 CCFPGCGKRF AYKHVKDNHE KSGCHVHAHG DFEEADEKFR SRPRGGRKRQ CPIVEMLVRK 360 RVSPSKQSGQ DTENF

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MEEAEAETEV PTFRDIRRYY CDLRLLWHLP VQKVPHCFSR PHLPEVIFCY GIIGFCLHSW  60
NWDMAEANGD GDSEVERGKS NTCQECGLSF KKPAHLKQHM QSHSLERPYV CSVDDCHSSY  120
RRKDHLTRHL FHHQGKLFKC PIENCNSEFA FQGNMTRHVS ELHGEDCPSA NDGCQKQHVC  180
QEKGCGKVFR FASQLRKHED SHVKLDRVEA FCSEPGCMKQ FPNEECLKAH IQSCHQHITC  240
EICGTKQLKK NIKSHPRTHE EGGSMERIKC DYEGCLQTFT IKSNLRQHVK AVHLENKPFV  300
CCFPGCGKRF AYKHVKDNHE KSGCHVHAHG DFEEADEKFR SRPRGGRKRQ CPIVEMLVRK  360
RVSPSKQSGQ DTENF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-130	C2H2 family protein