PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0228711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 115aa MW: 12965.6 Da PI: 8.1756

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0228711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	31	55	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC+ s++rk++L+rH+ H RcHm_v2.0_Chr7g0228711 31 YVCSvdDCHCSYRRKDHLTRHLFHH 55 99*******************9776 PP
2	zf-C2H2	13.7	0.00019	60	85	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ F + n++rH + H RcHm_v2.0_Chr7g0228711 60 FKCPieNCNSEFAFQGNMTRHVSElH 85 89*******************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence
MREGSDLSGL VPGGRPPVKL HQVNLSHARS YVCSVDDCHC SYRRKDHLTR HLFHHQGKLF 60 KCPIENCNSE FAFQGNMTRH VSELHGEDCP SANDGCQKQH VCQEKGCGKV FRFAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	6e-25	C2H2 family protein