PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0228721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 136aa    MW: 15591.1 Da    PI: 8.6954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0228721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-057094223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                            kC    C ++F+ ksnL++H +  H
  RcHm_v2.0_Chr7g0228721 70 KCDyeGCLQTFTKKSNLRQHVKAvH 94
                            688889**************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MRIPMLDRVE AFCSEPGCMK QFPNEQCLKA HIQSCHQHIT CEICGTKQLK KNIKSHLRTH  60
EEGGSMERIK CDYEGCLQTF TKKSNLRQHV KAVHLENKPF VCCFPGCGKR FAYKHVKDNH  120
EKSGCHVHAH VSFIPG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-59C2H2 family protein