PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0228771

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 286aa MW: 33135.7 Da PI: 8.9969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0228771	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	61	85	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kCp +C++ F + n++rH + H RcHm_v2.0_Chr7g0228771 61 KCPieNCNREFAFQGNMNRHVSElH 85 79******************99877 PP
2	zf-C2H2	13.4	0.00023	100	124	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C k+F+ s+L++H +H RcHm_v2.0_Chr7g0228771 100 HVCQekGCLKVFRFASQLRKHEDSH 124 789999***************9888 PP
3	zf-C2H2	15.9	3.7e-05	184	208	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C ++F+ ksnL++H + H RcHm_v2.0_Chr7g0228771 184 KCDyeGCLQTFTKKSNLRQHVKAvH 208 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MREVSDLNGL VPGGRPPVKL HQVNLSHAVF YLRDHVDDCH SSYRRKDHLT GHLFHHQGKL 60 KCPIENCNRE FAFQGNMNRH VSELHSEDCP SANDGCQKQH VCQEKGCLKV FRFASQLRKH 120 EDSHEWRHFV LSMKQFSNEQ CLKAHIQSCH QHITCEICGT KQLKKNIKSH LRTHEEGGSM 180 ERIKCDYEGC LQTFTKKSNL RQHVKAVHLE NKPFVCCFPG CGKRFAYKHV KDNHEKSGCH 240 VHAHGDFEEA DEKFRSRPRG GRKRQCPTVE MLVRKRVSLS KQSGQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	2e-92	C2H2 family protein