PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0229011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 236aa    MW: 26691 Da    PI: 7.9732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0229011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.6e-18350148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT++Ed +lvd+vk +G g W++++++ g++R++k+c+ rw +yl
  RcHm_v2.0_Chr7g0229011  3 RGAWTAQEDSILVDYVKTHGEGKWSKVSKERGLKRCGKSCRMRWMNYL 50
                            89********************************************97 PP
2Myb_DNA-binding50.83.9e-1656100147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ ++eE++l+ +++k+lG++ W++Ia +++ gRt+ ++k++w+++
  RcHm_v2.0_Chr7g0229011  56 RGNISPEEEDLIMRLHKLLGNR-WSLIAGRLP-GRTDSEIKNHWNTV 100
                             7899******************.*********.***********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MNRGAWTAQE DSILVDYVKT HGEGKWSKVS KERGLKRCGK SCRMRWMNYL RPNIKRGNIS  60
PEEEDLIMRL HKLLGNRWSL IAGRLPGRTD SEIKNHWNTV IRRKIINDNK KQCQSENKKQ  120
NNKPSDSGSH LLLTADSDTV HMNPVKNKEL PSTVLQQSQN AGYLETDVNA EPTQDGNSGN  180
GTVVMEPKPS SDVSISSTEG NPPDDIMGNY LEELLRSDIP ALEFWKLCNF DNDTVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-56MYB family protein