PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0229221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25566.2 Da    PI: 9.7991
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0229221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89.4e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien++nrqvtf+kRrng+lKKA+ELS+LC+aeva+i+fss+g+lyeys+
  RcHm_v2.0_Chr7g0229221  9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCEAEVALIVFSSRGRLYEYSN 59
                            79***********************************************95 PP
2K-box105.94.9e-35791736100
                   K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                  +e +a+++qqe+akL+ +i++Lq+++Rhl+G++L++L++keL+qLe++Le++l++iRskK+e+ll++ie+lqk+e el++en
  RcHm_v2.0_Chr7g0229221  79 A-TtITEINAQYYQQESAKLRHQIQMLQNSNRHLMGDSLTNLTVKELKQLENRLERGLTRIRSKKHEMLLAEIEYLQKREVELENEN 164
                             3.348899******************************************************************************* PP

                   K-box  92 kaLrkklee 100
                               +r+k++e
  RcHm_v2.0_Chr7g0229221 165 VLIRAKIAE 173
                             ******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCE AEVALIVFSS RGRLYEYSNN  60
NIRNTIERYK KASSDNSGAT TITEINAQYY QQESAKLRHQ IQMLQNSNRH LMGDSLTNLT  120
VKELKQLENR LERGLTRIRS KKHEMLLAEI EYLQKREVEL ENENVLIRAK IAEVERLQQA  180
DLVSGAEFNA IQALASRNFF GSTMVEGEAS YSQPEKKLLH LG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-117MIKC_MADS family protein