PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0230611
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 245aa    MW: 27822.1 Da    PI: 7.6205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0230611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.31e-2161422127
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkya.....tgkrknr.at 78 
                             p+G+rFhPtdeel+ +yL+ k + ++ + + v++e+d+y ++ePw +       + ++++++fF+  +kk++      ++r++r + 
  RcHm_v2.0_Chr7g0230611   6 PVGLRFHPTDEELIGHYLHLKNNPNSATPSLVLPEFDLYgEAEPWIIWDaygGPNLKQQDLFFFTLLKKKANprgghASSRHSRrVG 92 
                             89*******************99999777789*****99457*****74233333377899***99888877665543335555378 PP

                     NAM  79 ksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                             +sg+W++   +k+++ +  +++ +g k+ L + ++  p+ ++  W+m+ey+
  RcHm_v2.0_Chr7g0230611  93 SSGTWSQGEPSKPIFGEknQETPIGRKTKLRYENKLVPE-QHGCWIMEEYT 142
                             8**************98545555********99777777.899*******7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MDRCFPVGLR FHPTDEELIG HYLHLKNNPN SATPSLVLPE FDLYGEAEPW IIWDAYGGPN  60
LKQQDLFFFT LLKKKANPRG GHASSRHSRR VGSSGTWSQG EPSKPIFGEK NQETPIGRKT  120
KLRYENKLVP EQHGCWIMEE YTSVDDQSSC PAAHDHYVIC RLRENKTGQR GAIRRKSQDD  180
DDHHPKPRKK PKSLTVSDPQ PAFTTNEARK IVSLNQSPNP EQQFENELII SEGEAQSSIS  240
NCIGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193PRKKPKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.11e-11NAC family protein