PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0230721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 18926.4 Da    PI: 9.9966
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0230721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.4e-25957149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            k+ien   rqvtf+kRr+g+lKKA+ELSvLCda++ v+i+ss+gkl+e 
  RcHm_v2.0_Chr7g0230721  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIYSSHGKLFEL 57
                            68********************************************996 PP
2K-box49.41.9e-1784159984
                   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                             + e+++   ++e++ Lk+eie Lq+ +R + G + +++sl eLq Le++Le  + ++Rs K+++ll++i+ l++  
  RcHm_v2.0_Chr7g0230721  84 AMETQTLDAKKEINLLKQEIEILQKGLRYMFGGGAGTMSLDELQVLEKHLELWIYHVRSAKMDILLQEIQLLRNSV 159
                             5677788899***********************************************************9999765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLIYSS HGKLFELATK  60
GTMQGLIERY MKMKPARAPQ AETAMETQTL DAKKEINLLK QEIEILQKGL RYMFGGGAGT  120
MSLDELQVLE KHLELWIYHV RSAKMDILLQ EIQLLRNSVS SLIEHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-70MIKC_MADS family protein