PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0230931
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 187aa    MW: 20815.6 Da    PI: 10.3771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0230931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18555155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                            ++++GVr+++ +g+Wv+eIr+p        +r +lg+f +aeeAa+a+++a+  + g
  RcHm_v2.0_Chr7g0230931  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRMWLGTFESAEEAARAYDEAAILMSG 55
                            59*******9.**********8.....334*********************987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR MWLGTFESAE EAARAYDEAA ILMSGRNAKT  60
NFPVTTNEIA AANNKNSINN KSNSSSTTTT SPSATLSAKL RKCCSASLTC LRLDAENSHI  120
GVWQKRAGPR SDSNWLMMVE LGRKSGLEAE KVESTIVPQV SAGHETQGLN EEKRIALQMI  180
EELLSRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-57ERF family protein