PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0231501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 166aa    MW: 17829.8 Da    PI: 5.9092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0231501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-152069255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            + kGVr++k +g+Wv+eIr+p   g +  r +lg+f t e Aa a++ a  +l++
  RcHm_v2.0_Chr7g0231501 20 KLKGVRQRK-WGKWVSEIRVP---G-TqDRLWLGSFSTSEAAAVAHDVAYYCLRK 69
                            679*****9.**********8...3.35************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MSYSSEDSSI PTTTAGNGRK LKGVRQRKWG KWVSEIRVPG TQDRLWLGSF STSEAAAVAH  60
DVAYYCLRKP STLVGLNFPT ILPCSVYQVV DMSPRSIQKA ASDAGMAVDA QLINAYSNSS  120
SPQNGRQANR SEPRGMQGDG CWEDAGESSS VTTGGEALSI SIEDYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.19e-45ERF family protein