PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0231631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 196aa    MW: 21625 Da    PI: 4.7573
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0231631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-181867255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g
  RcHm_v2.0_Chr7g0231631 18 AYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 67
                            69****999.**********8...557***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MGEPNSSSST VYGAATSAYR GVRKRKWGKW VSEIREPGKK TRIWLGSFET PEMAAAAYDV  60
AALHFRGREA RLNFPELVNY LPRPASSSPD DIRMAAHEAA LRLRSNDGDT TNSLGAAGHC  120
DVGSSSSSGV APVTVRLSPS QIQAINESPL DSPKMWMQMS EALMFEESMM FSNDFDDEGM  180
NSNQWENIQQ DSLWDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-65ERF family protein