PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0231921
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 194aa    MW: 21479.2 Da    PI: 5.6321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0231921genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-192271255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr +k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++aa++ l+g
  RcHm_v2.0_Chr7g0231921 22 KYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEAPEMAAAAYDAAALHLRG 71
                            8*****999.**********8...557*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MTRETNQALP ADMKEAHEPA AKYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYEAPEMAAA  60
AYDAAALHLR GPGVMLNFPE MVDSLPRPAS SSPSDVQLAA QEATMRFRRL PMGSVSTEVA  120
GGSSGGAAPV TVGLSPSQIQ AINESPLDSP KMWMQYMYMS HRDEAFFVQE DMPSSMGFYD  180
DHDDGLQHQS IWDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-46ERF family protein