PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0232691
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 134aa    MW: 15067 Da    PI: 7.502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0232691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.1e-0874121255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             ++kGV      g W A+I+       + r++lg+f ++ +Aa  ++ a+ kl++
  RcHm_v2.0_Chr7g0232691  74 KFKGVVLQQ-IGHWGAQIYAI-----HNRVWLGTFNSEVDAAMSYDSAAIKLRN 121
                             799998777.8*******993.....5**********99*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    
MIHFCEVQTF YYYSCRMVLE MEEDLSSTVS NAGTTTRRKR TYQAEASISS ITGFLVQESK  60
RLSHGSSNLS TNAKFKGVVL QQIGHWGAQI YAIHNRVWLG TFNSEVDAAM SYDSAAIKLR  120
NGECPKELCM DQGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.14e-20RAV family protein