PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0234171
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 162aa    MW: 19510.5 Da    PI: 10.4633
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0234171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-111864248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            g W + Ed +l+d+++++G  +W+  ++  g+ R++k c++rw++yl
  RcHm_v2.0_Chr7g0234171 18 GTWAPVEDRKLLDYITRFGYWNWRQLPKFAGLSRCGKKCRLRWLNYL 64
                            78*******************************************97 PP
2Myb_DNA-binding48.52e-1571114247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              + T eE+e++++++++lG++ W++Ia+ ++ gRt+ ++k++w+  
  RcHm_v2.0_Chr7g0234171  71 RNYTCEEEEIIIRLHEKLGNK-WSAIAEQLQ-GRTDIEVKNHWHRN 114
                             67899****************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MVRTPCCDQC NKGSLKNGTW APVEDRKLLD YITRFGYWNW RQLPKFAGLS RCGKKCRLRW  60
LNYLNPNIKR RNYTCEEEEI IIRLHEKLGN KWSAIAEQLQ GRTDIEVKNH WHRNLKRRFM  120
VNKRTRPPQF QSDAGAICDD QPRTKRIPQT PDYLKDYVWS KR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.14e-48MYB family protein