PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0235081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 129aa    MW: 14997.7 Da    PI: 5.5527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0235081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.7e-1861162107
                     NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksg 81 
                             p+G+rF Ptd elv +yL+++ v g+++++ ++++++ d y   ePw +      + + + + +yfF++r+k ++t +   +++ sg
  RcHm_v2.0_Chr7g0235081   6 PVGVRFYPTDRELVGHYLHNRaVMGDQFQT-KFVSDCpDFYGQnEPWVIWdFyggNKSRNVEALYFFTHRSKLNPTAECFDQKVGSG 91 
                             89****************998466666777.88999999996549***9633333222234466*********************** PP

                     NAM  82 yWkatgkdkevlskkgelvglkktLv 107
                             +W+++ ++  v + +++++g+k  Lv
  RcHm_v2.0_Chr7g0235081  92 TWREQHSEDVVAK-DDSVMGIKWGLV 116
                             ***9988666655.999999997776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MELGFPVGVR FYPTDRELVG HYLHNRAVMG DQFQTKFVSD CPDFYGQNEP WVIWDFYGGN  60
KSRNVEALYF FTHRSKLNPT AECFDQKVGS GTWREQHSED VVAKDDSVMG IKWGLVDARV  120
PDRDYHSQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-12NAC family protein