PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0235131
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 357aa    MW: 38841.9 Da    PI: 4.6046
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0235131genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.32.9e-15210246135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  RcHm_v2.0_Chr7g0235131 210 CQHCGVGEnnTPAMRRGPAGPRTLCNACGLMWANKGT 246
                             ****998888************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MAAVNPQPLQ ARRPYEDHVA AGSFQMEDDE GGEYEDGGGD EAIMEEDEEE VHASSAAAAA  60
ARGGVSVLTA ATRTSELTLS FEGEVYVFPA VTPQKVQAVL LLLGGRDAPT GVPRVEMSYD  120
QNTRGVGDTP KRSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM HRKNGQFASL  180
KENSSGSGWD SAQSSLQDGT PRPETVLRRC QHCGVGENNT PAMRRGPAGP RTLCNACGLM  240
WANKGTLRDL SKGGRNLSMD HIEPGTPLEI KPSIVECEFS GNQDGHGARE DPSKSVIEGS  300
NDASVNLDVE NFQESAEDLT NTLPMGIVSS TNDDEQEPLL ELTNTSDTDL DIPTNFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133DTPKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-66GATA family protein