PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0235141
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 297aa    MW: 31965 Da    PI: 5.3548
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0235141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.75.6e-17206242135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  RcHm_v2.0_Chr7g0235141 206 CTHCGTSSkcTPMMRRGPSGPRSLCNACGLFWANRGV 242
                             *********************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MYGHAHPMDM QNQIPAGGGN DDDAPGPESI DNAHIHYEGH TLEDGGVVVE EATSDDVYIH  60
GGNTDLDMAI PYEGSSQLTL SFRGQVYVFD SVTPDKVQAV LLLLGGSESS SGAQGVDMTT  120
QNQRAITEFP TGCNQPHRAA SLNRFRQKRK ERCFDKKVRY SVRQEVALRM QRNKGQFTSS  180
KKSDGDYSWG SGQESRQDDS NAETSCTHCG TSSKCTPMMR RGPSGPRSLC NACGLFWANR  240
GVLRDISKRP PGHSLAAGEQ GEAEADDSDT GTAIVVHNAA DAVPLSNGDN KALVAET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.31e-80GATA family protein