PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0235201
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 184aa    MW: 20279.9 Da    PI: 5.3178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0235201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-171970156
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            + ykG+r +  +g+Wv eIr+p+++    r++lg+++t++eAa+a++aa  +++ge
  RcHm_v2.0_Chr7g0235201 19 CLYKGIRMRA-WGKWVTEIRVPKSG---GRIWLGSYDTPDEAARAYDAAVYCIYGE 70
                            56*****998.**********9543...8**********************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MDLPTTSKSK KVRREKTPCL YKGIRMRAWG KWVTEIRVPK SGGRIWLGSY DTPDEAARAY  60
DAAVYCIYGE CGRFNFPDFR RPVLPAGSTV SLSKGDIQQI AMNFASANVP ESLPVSATVK  120
TEVQADTPAS PNVLVSKDMA SAYEVKVDPL APTYASGAGS ADPPEDFHLD DFRMLDTDWI  180
ADFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.13e-48ERF family protein