PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0236661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 141aa    MW: 15948 Da    PI: 8.0362
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0236661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.95.8e-1757127274
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                             fY +YA+ +GF vr+ +sk+s+ ++e+++++f C+++g++  e +   +e+r r + r +Cka++ v ++k+g
  RcHm_v2.0_Chr7g0236661  57 FYTKYASAAGFVVRIGSSKRSRATNEFIRKEFFCNRQGNSPIELTG--DEKRIRGVVREDCKARMIVVRDKSG 127
                             9**************************************9998877..99999************99988755 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
METNGIIVPA EMETEPIQAI PLSEENCSTS AFYPQVRNEL KPFNGQQFKT WEEAHVFYTK  60
YASAAGFVVR IGSSKRSRAT NEFIRKEFFC NRQGNSPIEL TGDEKRIRGV VREDCKARMI  120
VVRDKSGGFV TPLAEVQSST Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-15FAR1 family protein