PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0236811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 25896.9 Da    PI: 4.4184
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0236811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.7e-27855249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +ien   rqvtfskRr+g++KKA ELSvLCdaevavi+fsstgklye 
  RcHm_v2.0_Chr7g0236811  8 KIENLPARQVTFSKRRQGLFKKAGELSVLCDAEVAVIVFSSTGKLYES 55
                            79********************************************95 PP
2K-box50.58.8e-18841691398
                   K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                             + +  ++e  +L+ke+     ++R++ G+dLe+L++ eLq+Le+++e +l+++ + K+e +++qi  l  k  el e+n++Lr++l
  RcHm_v2.0_Chr7g0236811  84 ELQLENNECMRLNKELADKILKLRQMEGQDLEELTIDELQRLENRIEGGLSRVLQAKDESIMSQIVALETKGAELTEANNQLRQRL 169
                             55667889999999887777788************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MNKIKIEKIE NLPARQVTFS KRRQGLFKKA GELSVLCDAE VAVIVFSSTG KLYESSSSST  60
KGVIARYNLH TEDGEEGDQQ PPPELQLENN ECMRLNKELA DKILKLRQME GQDLEELTID  120
ELQRLENRIE GGLSRVLQAK DESIMSQIVA LETKGAELTE ANNQLRQRLG MLSNGDGNRA  180
SGVALESEIS TDEEGGMASE FATSSTGYYG TGSSTSSLED DSSDNTLSLK LGLPRCG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.19e-59MIKC_MADS family protein