PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0236841
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 214aa    MW: 23661 Da    PI: 10.3526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0236841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-144590454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            +h+e+ErrRR+riN+ +++Lr+llP+       + +Ka+ L ++v+++k+L
  RcHm_v2.0_Chr7g0236841 45 SHKEAERRRRQRINTHLSTLRSLLPST-----ARTDKASLLAEVVQHVKDL 90
                            8*************************6.....59***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MLSFNELLLE RKYHRGYNFP SSWSPSVVNM KDGADSVTSS AASLSHKEAE RRRRQRINTH  60
LSTLRSLLPS TARTDKASLL AEVVQHVKDL KWRADELARQ EGDSSPFPGE LDEASVSYYG  120
EGLLKATLCC EDRPGLNRDL VQAIRSVRVT PVKAEMVTVG GRTKSVVVMK RTGGGGGEEE  180
VKDLKVALKA VVENRAFGSR VGLLGKRARF YRSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.15e-33bHLH family protein