PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0238141

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 338aa MW: 37985.6 Da PI: 6.4255

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0238141	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	4e-13	126	177	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ RcHm_v2.0_Chr7g0238141 126 QRMTHIVVERNRRKQMNEYLAVLRSLMPTS---YVQRGDQASIIGGAINFVKELE 177 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MALEAVVYPK DYNPFSYVCK DFYSLAPSNW GYDFSLQENI QDKALVGLLD HQYNNIHHHQ 60 GSLNENWEYN CSSSPPSLLQ NVKEWDPHSS PEALETPPPP PPPATTGRRK RRRTRSSKNK 120 EEMENQRMTH IVVERNRRKQ MNEYLAVLRS LMPTSYVQRG DQASIIGGAI NFVKELEQLL 180 QSMDGSHKSS TKPEQVPLAE FFTFPQFSTP ATTQCNSNTS SSSSSSSEGI INDEPSLAPR 240 SNNNNNQWPA ADIEVTMVDS HANLKILSKK RPRQLLKMVA GFQSLGLSVL HLNVTTVDEM 300 VLYSVSVKIE EGCLLNTVDE IAAAVNEMLR RIQEAGFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	113	RKRRR
2	109	114	RKRRRT
3	127	138	RMTHIVVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-86	bHLH family protein