PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0238891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 302aa    MW: 33760.9 Da    PI: 6.2635
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0238891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.22.6e-201461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEde+lv++++q+G g+W++ ++  g++R++k+c++rw +yl
  RcHm_v2.0_Chr7g0238891 14 KGPWTPEEDEKLVQYIQQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding50.74.2e-1667112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg +++eE++ +++++  lG++ W++Ia ++  gRt++++k++w+++l
  RcHm_v2.0_Chr7g0238891  67 RGHFSQEEEQTILHLHSILGNK-WSAIATHLD-GRTDNEIKNFWNTHL 112
                             799*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MGKSPCCDEP GLKKGPWTPE EDEKLVQYIQ QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGHF SQEEEQTILH LHSILGNKWS AIATHLDGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHQPRT DLFSNLQDLL PLQFQTLDQL AATTLHDAAE AVAQLVKLQY LHQQYVLQSH  180
LLNSSVGSYA PPPIQENLPV LNSSQLVLEN ASSSSQPLHY GSSVPHHNNP QVPFSTFAVP  240
EIDEMGQCTN FTSMVSSLSQ AEKNPPEIYE YSPYSSNTPT PVADTLINNP GDASCSTSVM  300
EE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-97MYB family protein