PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0239701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 377aa    MW: 41083.7 Da    PI: 6.6324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0239701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20177226255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  RcHm_v2.0_Chr7g0239701 177 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 226
                             59******9.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MAAMDIYSSR PLQSSSDPFT GELMEALEPF MKSASPPPPC SSYSPSSFDF NPSIPTPSSS  60
YSSSSTPFLS STPSPSSSYN YLSFSPSIPT PQPNLYQDGG STFSLGFEQQ GSIGLNHLTP  120
SQIHQIQAEI QLQNQPQMMA WQQNYQQQSS PSHTLSFLSP KPVPMKQSGS PPKPTKLYRG  180
VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AYKLRGDFAR LNFPHLKHTG  240
SVVGGEFGEY KPLHSSVDAK LQAICEGLAE SQKQGKAGKQ AGAAKKSSAA RSQQKPKSTP  300
VPEPEPEALT VKMESSSLSP VMTDSDGSAG SSPLSDLTFA DYSESSSPWE NCGTESYMLE  360
KYPSEIDWAS ILNQNSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-66ERF family protein