PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0240131
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 71aa    MW: 8409.93 Da    PI: 11.0728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0240131genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.4e-27959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien+snrqvtfsk r g++KKA+ELS+LCd+++a+i+fs++g+l  +ss
  RcHm_v2.0_Chr7g0240131  9 KRIENNSNRQVTFSKCRYGLIKKAYELSILCDIDIALIMFSPSGRLSHFSS 59
                            79**********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    
MGRFKLEIKR IENNSNRQVT FSKCRYGLIK KAYELSILCD IDIALIMFSP SGRLSHFSSK  60
RRFLSIHIRF Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.19e-32MIKC_MADS family protein