PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0241041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 142aa    MW: 16327.8 Da    PI: 6.6803
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0241041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-312381259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                            +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+++Hnh+
  RcHm_v2.0_Chr7g0241041 23 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTNSHNHR 81
                            699***********************9988****************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MIRPKTQASK RKVAHQKNEG PPSDFWSWRK YGQKPIKGSP YPRGYYRCST SKGCSAKKQV  60
ERSKTDASVL IITYTNSHNH RGPHVTSTTK NQSPPPKEAQ MQTNSEDDDH DLTAEVPKED  120
EPEPEPDQDE EQEQERKVDE YE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-34WRKY family protein