PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0243841
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 283aa    MW: 32286.7 Da    PI: 8.4382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0243841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021103119117
                             EEETTTTEEESSHHHHH CS
                 zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                             ++C+ C k+F+r  nL+
  RcHm_v2.0_Chr7g0243841 103 FSCHVCFKTFNRYNNLQ 119
                             89************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MEPSEISSRF ARTLNLFPNE KDPNQVPNSH DLGFSSSENP KFCSEDHNKE DEVTIALHIG  60
LPEYSDGSVN STEKEVSDHE NVTAEQKFWI PTREQILIGF THFSCHVCFK TFNRYNNLQV  120
QSKIVCIILG QNILRSYGNF LLSDCLMHMW GHGSQYRRGP ESLKGTQPRA MLGLPCYCCA  180
EGCKNNIDYP RAKPLKDFRT LQTHYKRKHG VKPFMCRKCG KLLAVKGDWR THEKNCGKRW  240
LCTCGSDFKH KRSLKDHMKA FGSGHSPFPP TSFDEDSTAA SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-108C2H2 family protein