PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co7961052.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 159aa MW: 17297.9 Da PI: 8.7146

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co7961052.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.1	3.6e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lq Rmu_co7961052.1_g000001.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELSATQREDAVNSLAYEAEARLRDPVYGCVGLISILQ 90 7********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 q+l+q++ +l +++e Rmu_co7961052.1_g000001.1 91 QRLKQVQLDLYNARKE 106 *****999888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK ILNELSATQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQLDL YNARKELATY MGPQAMLSIL 120 QPTSYMPQQI QGGGNASSSS VVVPYNMSPM MGIPTGAAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-81	LBD family protein