PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8058466.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 154aa MW: 17267.7 Da PI: 9.0831

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8058466.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129	2.1e-40	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l+++++e+am+++++++++ra+dPv G++++i++lq Rmu_co8058466.1_g000001.1 35 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDHHDKEEAMRTIIFQSDVRASDPVGGCYRIIQELQ 118 7********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 + +e kael+ + ++ Rmu_co8058466.1_g000001.1 119 RLIEYNKAELDIVLHQ 134 ********988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence
MSITSGSIVT RTSSPTTPNS SSSSSSTKGN GNTQACAACK YQRRKCAPDC ILAPYFPHDR 60 QRQFLNAHKL FGVSNITKII KHLDHHDKEE AMRTIIFQSD VRASDPVGGC YRIIQELQRL 120 IEYNKAELDI VLHQLAICRA QAQQQQQPIM QQIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-51	LBD family protein