PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8062944.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 190aa    MW: 21684.2 Da    PI: 9.0394
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8062944.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS193.61.3e-59118925215
                       GRAS  25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108
                                +++ +++sp gd  qRla++f++AL+arla++++++y al++++ s    ++ l++++++  ++P+ k+s + aN +Il+a+e+
  Rmu_co8062944.1_g000001.1   1 KQIMQHSSPFGDCAQRLAHCFANALEARLAGTGTQIYTALSTKRMS---AADMLKYYQAYITACPLNKMSLIFANDMILKAAEK 81 
                                5899************************************999998...9********************************** PP

                       GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                                +e++HiiDf+i +G+QWpa+++ L+ Rp+gpp+lRiTgv+ p sg   +e+++etg+rLak++++++vpfe+ + +ak++++++
  Rmu_co8062944.1_g000001.1  82 AETLHIIDFGILYGFQWPAFIHCLSRRPGGPPKLRITGVELPLSGfrPEERVQETGHRLAKYCRRFNVPFEYYA-IAKKWDTVQ 164
                                ******************************************9999****************************.7******** PP

                       GRAS 191 leeLrvkpgEalaVnlvlqlhrlld 215
                                +++L+v+++E+laVn+v + ++lld
  Rmu_co8062944.1_g000001.1 165 FDDLKVQRNEVLAVNCVCRFKNLLD 189
                                *******************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
KQIMQHSSPF GDCAQRLAHC FANALEARLA GTGTQIYTAL STKRMSAADM LKYYQAYITA  60
CPLNKMSLIF ANDMILKAAE KAETLHIIDF GILYGFQWPA FIHCLSRRPG GPPKLRITGV  120
ELPLSGFRPE ERVQETGHRL AKYCRRFNVP FEYYAIAKKW DTVQFDDLKV QRNEVLAVNC  180
VCRFKNLLDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.17e-90GRAS family protein