PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8102754.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 143aa    MW: 15352.6 Da    PI: 4.7388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8102754.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS98.88.1e-31211421119
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaal 81 
                                lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  + ps+ + k+   ++++  al
  Rmu_co8102754.1_g000001.1  21 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLASRLALVQPLGAVGFVPSKLNAKDyalMDKKEEAL 104
                                689***************************************************9666666666777777777789999999** PP

                       GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdi 119
                                +l +e++P ++f+h++aN+ Ilea+ege+ vH++D+++
  Rmu_co8102754.1_g000001.1 105 RLVYEICPHIQFGHFVANSSILEALEGESFVHVVDLGM 142
                                ************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MINAEENGAE QEDGTADGMR LVQLLIACAE AVACRDKSHA SALLSELRAN ALVFGSSFQR  60
VASCFVQGLA SRLALVQPLG AVGFVPSKLN AKDYALMDKK EEALRLVYEI CPHIQFGHFV  120
ANSSILEALE GESFVHVVDL GMT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-20GRAS family protein