PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8108256.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 167aa    MW: 19615.9 Da    PI: 8.4855
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8108256.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix881.1e-2772154286
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                                W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf r+p++C++kw+nl k++kk k++  ++    s +++y++++
  Rmu_co8108256.1_g000001.1  72 WVQDETRSLIALRREMDSMFNTSKSNKHLWEQISAKMREKGFDRNPNMCTDKWRNLLKEFKKAKHNHDRG--SGSAKMSYYKEI 153
                                ********************************************************************98..44558*****99 PP

                   trihelix  86 e 86 
                                e
  Rmu_co8108256.1_g000001.1 154 E 154
                                8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MYLSEKPHPV DFHKGDEGGE DMMIEVVPNE DASQTHHRNH QQHHQLLLLG DSSGSGEDHE  60
ANKPQKKRAE TWVQDETRSL IALRREMDSM FNTSKSNKHL WEQISAKMRE KGFDRNPNMC  120
TDKWRNLLKE FKKAKHNHDR GSGSAKMSYY KEIEEILKER NKNGQYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.33e-59Trihelix family protein