PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8108556.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 197aa    MW: 22611.8 Da    PI: 6.3971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8108556.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS239.81.1e-732196177373
                       GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                                ef+  v     d+++++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl+rf+e+
  Rmu_co8108556.1_g000001.1   2 EFHG-VPVFAPDVTPDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRIVKSLSPKVTTLVEQESNTNTTPFLNRFIET 84 
                                5666.455667899********************************************************************** PP

                       GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                                l+yy a+f+s++++lpr+s+eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr +
  Rmu_co8108556.1_g000001.1  85 LDYYLAMFESIDVTLPRNSKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCY 168
                                *********************************************************************************999 PP

                       GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                + + y++ee++g+++lgWk+r+Lvs+SaW
  Rmu_co8108556.1_g000001.1 169 S-EHYKLEEKDGAMLLGWKERNLVSASAW 196
                                9.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
VEFHGVPVFA PDVTPDMLDV RPGEALAVNF PLQLHHTPDE SVDVNNPRDG LLRIVKSLSP  60
KVTTLVEQES NTNTTPFLNR FIETLDYYLA MFESIDVTLP RNSKERINVE QHCLARDIVN  120
VIACEGKERV ERHELFGKWK SRLTMAGFRQ YPLSSYVNSV IRSLLRCYSE HYKLEEKDGA  180
MLLGWKERNL VSASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.17e-94GRAS family protein