PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8233911.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 193aa    MW: 22803.1 Da    PI: 5.7855
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8233911.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1741.1e-532190185373
                       GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                                ++e++++e+L+v+++E+laVn++l+ ++llde+v+++ +rd+vLkl+++l+P+++v++  +  +n++ F++rf eal ++sal+
  Rmu_co8233911.1_g000001.1   2 NWESIQVEDLKVERNEVLAVNCMLRFKNLLDETVEVNCPRDSVLKLIRRLKPDIFVHTIVNGAYNAPFFVTRFREALFHFSALY 85 
                                7999******************************************************************************** PP

                       GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                                d +++++pr+s+er + E e+ gre++nv+aceg er+er et+++W+ r ++aG++ +pl+++++k  +  ++  + + + ++
  Rmu_co8233911.1_g000001.1  86 DVFDVNIPRDSSERLMFESEFYGREAMNVIACEGIERVERAETYKQWQVRCQRAGLQLLPLDQEVVKVFRDKVKAWYHKDFAID 169
                                *****************************************************************************888**** PP

                       GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                                ++s+++++gWk+r +++ S+W
  Rmu_co8233911.1_g000001.1 170 QDSDWMLQGWKGRIVYASSCW 190
                                ********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
QNWESIQVED LKVERNEVLA VNCMLRFKNL LDETVEVNCP RDSVLKLIRR LKPDIFVHTI  60
VNGAYNAPFF VTRFREALFH FSALYDVFDV NIPRDSSERL MFESEFYGRE AMNVIACEGI  120
ERVERAETYK QWQVRCQRAG LQLLPLDQEV VKVFRDKVKA WYHKDFAIDQ DSDWMLQGWK  180
GRIVYASSCW VPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.12e-93GRAS family protein