PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8252927.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 163aa MW: 18683 Da PI: 10.1043

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8252927.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.1	7.4e-26	21	103	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W ++e+++Li +rre++ ++++k++k+lWe++s kmr++gf rsp++C++kw+nl k++kk +++ k + +s ++ y+++l Rmu_co8252927.1_g000001.1 21 WIQEETRCLISFRREVDGLFNTSKSNKHLWEQISGKMRDKGFDRSPTMCTDKWRNLLKEFKKARQQVKVG--SRSAKMLYYEDL 102 *******************************************************************998..455579999999 PP trihelix 86 e 86 + Rmu_co8252927.1_g000001.1 103 Q 103 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence
NTSSGGEDHE VRAPKKRAEH WIQEETRCLI SFRREVDGLF NTSKSNKHLW EQISGKMRDK 60 GFDRSPTMCT DKWRNLLKEF KKARQQVKVG SRSAKMLYYE DLQELIRDRT SHNNSTNAAN 120 NAAAAAYKRP NSPPKLESFI RFSDKSLEDA GIPFGPMEGI SSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	1e-62	Trihelix family protein