PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8258053.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 242aa    MW: 28602.2 Da    PI: 8.6102
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8258053.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2301.1e-701240137374
                       GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                                +gpp+++iT+++ p++g   +e++eetg+rLa+++++++vpfe+nv +a+++e++++e+L+++++E ++Vn++++l +++de+v
  Rmu_co8258053.1_g000001.1   1 GGPPQIQITAIELPQPGfrPTERVEETGRRLARYCAKFNVPFEYNV-IAQKWESIRVEDLNIDRNELIVVNCMHRLRHIPDETV 83 
                                589*************9****************************9.7************************************ PP

                       GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                                 ++s+rd+vLkl+k+++P+++v+   +  ++ + F++rf eal ++ alfd++ea +pre+++r++ Ere+ gr+i nvvaceg
  Rmu_co8258053.1_g000001.1  84 MVSSPRDRVLKLIKKINPDLFVHGIINGTYSPPFFVTRFKEALFHFGALFDMFEAIVPREDQWRQMFEREIYGRDIINVVACEG 167
                                ************************************************************************************ PP

                       GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 er+er et+++W+ r  + GFk+vpl+++  +++k++l+ ++  + +r++e+ +++++gWk+r ++++S+W+
  Rmu_co8258053.1_g000001.1 168 LERVERPETYKQWNLRTLRTGFKQVPLEQDCLMKVKSMLKLTSyHKDFRIDEDGEWMLQGWKGRIVMALSFWK 240
                                *****************************************999999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
GGPPQIQITA IELPQPGFRP TERVEETGRR LARYCAKFNV PFEYNVIAQK WESIRVEDLN  60
IDRNELIVVN CMHRLRHIPD ETVMVSSPRD RVLKLIKKIN PDLFVHGIIN GTYSPPFFVT  120
RFKEALFHFG ALFDMFEAIV PREDQWRQMF EREIYGRDII NVVACEGLER VERPETYKQW  180
NLRTLRTGFK QVPLEQDCLM KVKSMLKLTS YHKDFRIDED GEWMLQGWKG RIVMALSFWK  240
PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-108GRAS family protein