PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8278389.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GeBP

Protein Properties

Length: 169aa MW: 20097.1 Da PI: 9.2544

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8278389.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	50.8	4.8e-16	102	168	3	71
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk 71 +r+ws+eDe+ lL+ ++d++++ ++++ fy+ v+ + + ++sk+ l eKi rLKkK ++ v+k Rmu_co8278389.1_g000001.1 102 RKRIWSKEDELELLKNFLDYRTRPR--TANETTSFYDEVNPKFKDQFSKRKLAEKIARLKKKHRNVVNK 168 68****************77766..6689*******************************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MPWPLLKWIM YTSSSSSSSS EDFSDAEDEG TSKKGNDHGR DPNKQGEQNH DDDSNEDDFS 60 YKPQEDETSN SSDYTFTINE PRRKRRRIDN KEDSTIVSFK RRKRIWSKED ELELLKNFLD 120 YRTRPRTANE TTSFYDEVNP KFKDQFSKRK LAEKIARLKK KHRNVVNKM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	104	RRKRRRIDNKEDSTIVSFKRRKR
2	83	87	RKRRR
3	83	105	RRKRRRIDNKEDSTIVSFKRRKR
4	84	88	KRRRI
5	84	106	RRKRRRIDNKEDSTIVSFKRRKR
6	85	107	RRKRRRIDNKEDSTIVSFKRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	4e-15	GeBP family protein