PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8279117.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 274aa    MW: 31771.8 Da    PI: 8.8612
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8279117.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.92.7e-812274101371
                       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                                +I++ +e+++ +HiiDf+ s+G+QWp+L+q L++R +gpp+lRiT+++ p++g   +e++eetg+rLak+ +++ vpfef+v +
  Rmu_co8279117.1_g000001.1   2 TIMKLAEKATSLHIIDFGTSYGFQWPSLIQCLSERHGGPPKLRITTIELPQPGfrPTERVEETGRRLAKYSARFSVPFEFHV-I 84 
                                689999**********************************************9****************************9.7 PP

                       GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                                a+++e++ +++L+++++E ++Vn+ ++l++++d ++  +s+rd+vLkl+k+++P+++++   +  +ns+ Fl+rf +al +y a
  Rmu_co8279117.1_g000001.1  85 AQKWETVGFDDLKIDRNELIVVNCLHRLKHVPDVTMMGNSPRDAVLKLIKKINPEIFIHGVVNGAYNSPFFLTRFKQALFHYDA 168
                                ************************************************************************************ PP

                       GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                                lf+ +e+++p e+++r + Er+  gr+i+nvvaceg e +er et++kW+ r  +aGFk++pl+++  k++k++ + ++  + +
  Rmu_co8279117.1_g000001.1 169 LFNVFETTIPCEDQQRLFFERAGYGRDIMNVVACEGLEIVERPETYKKWQVRTVRAGFKQLPLDQELLKKVKTMSKSMGyHNDF 252
                                ******************************************************************************99999* PP

                       GRAS 350 rveeesgslvlgWkdrpLvsvS 371
                                +++e+++++++gWk+r L+++S
  Rmu_co8279117.1_g000001.1 253 SIDEDEQWMLQGWKGRVLMALS 274
                                *******************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MTIMKLAEKA TSLHIIDFGT SYGFQWPSLI QCLSERHGGP PKLRITTIEL PQPGFRPTER  60
VEETGRRLAK YSARFSVPFE FHVIAQKWET VGFDDLKIDR NELIVVNCLH RLKHVPDVTM  120
MGNSPRDAVL KLIKKINPEI FIHGVVNGAY NSPFFLTRFK QALFHYDALF NVFETTIPCE  180
DQQRLFFERA GYGRDIMNVV ACEGLEIVER PETYKKWQVR TVRAGFKQLP LDQELLKKVK  240
TMSKSMGYHN DFSIDEDEQW MLQGWKGRVL MALS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.21e-115GRAS family protein