PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8301667.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 271aa MW: 30150.6 Da PI: 10.1755

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8301667.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53	8.9e-17	2	90	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +Wt++e +aLi + ++++++l+r++lk+++W++v++ + ++++ qC +k+e+l+kry+ +k++++ r +++ s ++++ Rmu_co8301667.1_g000001.1 2 CWTDDEAQALISVFKDKWSSLGRTNLKANDWDDVAATLaaqfPLVSPSKTAAQCHNKIEKLRKRYRSEKQRASTR-PGRFSPWALY 86 8***********************************5443334558999********************98.7888899999 PP trihelix 83 dqle 86 + +e Rmu_co8301667.1_g000001.1 87 RFME 90 9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
LCWTDDEAQA LISVFKDKWS SLGRTNLKAN DWDDVAATLA AQFPLVSPSK TAAQCHNKIE 60 KLRKRYRSEK QRASTRPGRF SPWALYRFME ELEGESGKGS GHTARKGEGN SSSRFLADLD 120 EFVDVRSGGG DAGFPVKSLG HRNLAPLFSP KMKLKKNESS GFLRKFGGVE SSGVGVNDLG 180 GSSGLLRSVR EVDPVEEMVS SIQLLGEKYM KVEKRKMEMA REIVMMQMDM EMKQTQVIME 240 SQQQIVNACV SALLDSKKKK KRKMKAVSTD S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	263	KKKKKRK
2	257	264	KKKKKRKM
3	258	263	KKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-37	Trihelix family protein