PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8308583.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HRT-like

Protein Properties

Length: 255aa MW: 28261 Da PI: 10.0026

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8308583.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.9	3.5e-18	119	149	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dGs+C+++Pv+gRK C+eHKGmRi Rmu_co8308583.1_g000001.1 119 ICGVAVGDGSICRKEPVQGRKWCAEHKGMRI 149 8*****************************7 PP
2	HRT-like	58.9	8.1e-19	188	218	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +dGs C+++Pv+gRKRC+eHKGmRi Rmu_co8308583.1_g000001.1 188 ICGVAAGDGSKCRTPPVQGRKRCAEHKGMRI 218 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGTKSEALKT ESQLLNTFDY AWNTSINGAR RPDDVLQKLK KISSKPTRFT NIVQRLQPFR 60 QKQVGIRINS SKLVSTEDKF SDHADRESRT LIAQVFKFGR SHPRLVLDRS GITQENTIIC 120 GVAVGDGSIC RKEPVQGRKW CAEHKGMRIT GSITVRISNS NIDSKCSVIS NREFVSYESG 180 ITQENTEICG VAAGDGSKCR TPPVQGRKRC AEHKGMRIKG SITVGISDKN VDSKCSVLNN 240 TELDSHDASN VKYEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-39	HRT-like family protein