PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8325249.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 205aa    MW: 22912.4 Da    PI: 6.3903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8325249.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS217.95.3e-671180193374
                       GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                                +L+v p+Ea+aVn+++qlhrll ++ + +s+++ +L  +++l+Pk+v+vveqeadhn++ Flerf+eal+yys +fdslea   
  Rmu_co8325249.1_g000001.1   1 MLQVGPKEAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKAGFLERFTEALYYYSNMFDSLEAC-- 82 
                                6999***************************************************************************998.. PP

                       GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                                 + + ++++ +++++rei+nvv+ceg +r+erhe l+kWr rle aGF+p++l+++a kqa++ll  ++ +gyrvee++g+l+l
  Rmu_co8325249.1_g000001.1  83 GAMQPDKTLAEMYIQREICNVVCCEGLARVERHEPLSKWRIRLELAGFSPLHLGSNAFKQASMLLTLFSAEGYRVEEKEGCLTL 166
                                4567788888899*********************************************************************** PP

                       GRAS 361 gWkdrpLvsvSaWr 374
                                gW++rpL+++SaW+
  Rmu_co8325249.1_g000001.1 167 GWHSRPLIAASAWQ 180
                                *************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MLQVGPKEAV AVNSIMQLHR LLGSDSNRNS PIEMMLGWIR NLNPKIVTVV EQEADHNKAG  60
FLERFTEALY YYSNMFDSLE ACGAMQPDKT LAEMYIQREI CNVVCCEGLA RVERHEPLSK  120
WRIRLELAGF SPLHLGSNAF KQASMLLTLF SAEGYRVEEK EGCLTLGWHS RPLIAASAWQ  180
VMPLPEATAT ATNPLGIVNH SANHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-69GRAS family protein