PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8327627.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 238aa    MW: 26717.6 Da    PI: 9.4919
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8327627.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.26.5e-1622110271
                   trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                                Wt  e+++Liea++ +eer   ++                    ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e
  Rmu_co8327627.1_g000001.1  22 WTVGETMVLIEAKKMDEERRIMKRsgsgsgdhgadqtprsiskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVRE 105
                                *************95555443222234555666666666666699*************************************** PP

                   trihelix  67 gekkr 71 
                                 ek+ 
  Rmu_co8327627.1_g000001.1 106 YEKRS 110
                                *9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MAEIQGGNSG SFVMRDYRKG NWTVGETMVL IEAKKMDEER RIMKRSGSGS GDHGADQTPR  60
SISKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYEKRS VGVGENKELA  120
SYWKLEKSER KERNLPTNMV PQIYESLVEV VEKREMGRIV VGGGGASVSG SISPNPNIGY  180
AVERPIISGI HQSTVLSPPP VLQQHLIQPQ PISAMHLLPA PLAAQPPPPL PYSQPIPP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.18e-59Trihelix family protein