PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8331139.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 211aa    MW: 23654.7 Da    PI: 6.5155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8331139.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.3e-051362154
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               +r  +  rE++ R+++N+ f  L + l  +    ++   Ka+iL +A++ +k+L
  Rmu_co8331139.1_g000001.1 13 KRIHKAVREKQKREHLNDLFLDLSDALELN----QQNTGKATILCEATRLLKDL 62
                               6888899********************998....68899*********999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
VCPGKKIQGK MPKRIHKAVR EKQKREHLND LFLDLSDALE LNQQNTGKAT ILCEATRLLK  60
DLLGQIESLR NENVSLLSES NYMTVEKNEL REDTSALETQ IERLQSELQE RVRQSKPDLN  120
VPPVEVRQEV ASHFPGNCVG FPAQESALQQ APAVFVMPLH PDLQTYPPAD SAHLTSKTNS  180
NVSKPHPRYP TSVDSWPFQL LSEQPAAGKD S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.23e-69bHLH family protein