PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8338923.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 333aa    MW: 36418.2 Da    PI: 7.7956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8338923.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07165185526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+ f++ G C+ Gd C +aHg
  Rmu_co8338923.1_g000001.1 165 PCPEFRK-GSCQKGDVCEYAHG 185
                                8******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
VNRSCGSDRV TALHCATAGG SSSSLEVVKL LLDASADANC VTANGNKPVD LIAPALKSPC  60
NSRRKAMEML LKGDMSLLGS DIDDQEVPSL QLLKEGSEKK EYPIDIALPD INNGIYGSDE  120
FRMYTFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YSCVPCPEFR KGSCQKGDVC  180
EYAHGVFESW LHPAQYRTRL CKDETGCTRK VCFFAHKPEE LRPVYVSTGS AMPSPRSMSA  240
SAGDMTTMSP LALGSPSLSM PTASTPPMSP IAASSPKNGG LWQNKVNLTP PALQLPGSRL  300
KSASSARDLD LEMEFLGRDN HANQQQQQQQ QQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-124C3H family protein