PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8351427.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 229aa MW: 25642.8 Da PI: 4.8267

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8351427.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.6	1.8e-37	7	103	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++Cv+apyf+ +q + +f +vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v+ i++l Rmu_co8351427.1_g000001.1 7 SCGACKFLRRKCTSQCVFAPYFCYDQaATHFSAVHKVFGASNVSKLLLHLPVQHRSDAALTMSYEAIARMRDPIYGCVSQIFAL 90 6**********************9789*************************************************** PP DUF260 84 qqqleqlkaelal 96 qqq++ l++e+++ Rmu_co8351427.1_g000001.1 91 QQQVAYLQEEIET 103 *******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MTGLGSSCGA CKFLRRKCTS QCVFAPYFCY DQAATHFSAV HKVFGASNVS KLLLHLPVQH 60 RSDAALTMSY EAIARMRDPI YGCVSQIFAL QQQVAYLQEE IETLLGNQMI NLASGNSSTC 120 GSSEANSNSN SFNWLQVFSQ QYDIAVDTQK FQIQPEPPIL LPQVGIASTN QSFSSHEMDI 180 QMPPLHEWEE VKIFGDHSMQ DPLERFLEGI DQENFGHNPW LNDPSIAWN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	5e-55	LBD family protein