PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8381461.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SBP
Protein Properties Length: 232aa    MW: 25966.3 Da    PI: 9.6144
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8381461.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.53.4e-42141217278
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q 
  Rmu_co8381461.1_g000001.1 141 CQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQV 217
                                **************************************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MESWSCISEG KGFVPDETIS HTDSLARNRS ALMGWDLKIP CTFESQGFGE LGLAEMLGKH  60
LPRSTTSMGT LNPFFGEDES TSKLSSSIVE SNSRDSSLFD LKLDAYTSKS SKKASIFSTS  120
ESSTPAKRMR VSGVYSPTAY CQVYGCNKDL SSSKDYHKRH KVCEAHSKTA KVIVKGIEQR  180
FCQQCSRFHL LAEFDDGKRS CRKRLAGHNE RRRKPQVRIH SGRDGRLLQS YS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.14e-51SBP family protein